PubMLST Database home Contents
Log in
Help

Full information on isolate 6901-05 (id:3971)

Provenance/meta data

id
3971
isolate
6901-05
country
USA
continent
North America
region
Connecticut
serotype
19A
age yr
53
host
human
source
blood
penicillin
0.12
erythromycin
0.03
tetracycline
2
chloramphenicol
2
cefotaxime
0.06
sender
Bernard Beall, CDC Streptococcal Genetics Lab
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
50 updates show details
date entered
2006-06-11
datestamp
2020-03-27

Publications (3)

  • Bogaardt C, van Tonder AJ, Brueggemann AB (2015). Genomic analyses of pneumococci reveal a wide diversity of bacteriocins - including pneumocyclicin, a novel circular bacteriocin. BMC Genomics 16:554
  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
10
total length
2,102,229 bp
max length
578,448 bp
mean length
210,223 bp
N50 contig number
3
N50 length (L50)
280,989
N90 contig number
7
N90 length (L90)
131,522
N95 contig number
9
N95 length (L95)
61,813
loci tagged
1,379
detailed breakdown
Display

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Analysis: