PubMLST Database home Contents
Log in
Help

Full information on isolate 6735-05 (id:3956)

Provenance/meta data

id
3956
isolate
6735-05
country
USA
continent
North America
serotype
19A
age yr
50
host
human
source
lung aspirate
penicillin
2
erythromycin
0.03
tetracycline
2
chloramphenicol
2
cefotaxime
1
comments
Population-based surveillance of serotype 19A inva
sender
Bernard Beall, CDC Streptococcal Genetics Lab
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
58 updates show details
date entered
2006-10-25
datestamp
2020-04-01

Publications (3)

  • Bogaardt C, van Tonder AJ, Brueggemann AB (2015). Genomic analyses of pneumococci reveal a wide diversity of bacteriocins - including pneumocyclicin, a novel circular bacteriocin. BMC Genomics 16:554
  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
11
total length
2,118,488 bp
max length
628,111 bp
mean length
192,590 bp
N50 contig number
2
N50 length (L50)
484,939
N90 contig number
6
N90 length (L90)
99,571
N95 contig number
7
N95 length (L95)
62,430
loci tagged
1,382
detailed breakdown
Display

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Analysis: