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Full information on isolate 4027-06 (id:3929)

Provenance/meta data

id
3929
isolate
4027-06
country
USA
continent
North America
serotype
19A
host
human
source
blood
penicillin
2
erythromycin
0.06
tetracycline
2
chloramphenicol
2
cefotaxime
0.5
comments
Population-based surveillance of serotype 19A inva
sender
Bernard Beall, CDC Streptococcal Genetics Lab
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
33 updates show details
date entered
2006-10-16
datestamp
2020-03-27

Publications (3)

  • Bogaardt C, van Tonder AJ, Brueggemann AB (2015). Genomic analyses of pneumococci reveal a wide diversity of bacteriocins - including pneumocyclicin, a novel circular bacteriocin. BMC Genomics 16:554
  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
7
total length
2,116,267 bp
max length
859,772 bp
mean length
302,324 bp
N50 contig number
2
N50 length (L50)
437,416
N90 contig number
4
N90 length (L90)
209,596
N95 contig number
5
N95 length (L95)
103,582
loci tagged
1,376
detailed breakdown
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