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Full information on isolate UoS2305 (id:34106)

Provenance/meta data

id
34106
isolate
UoS2305
country
UK [England]
continent
Europe
region
Southampton
year
2008
serotype
6B
diagnosis
carriage
host
human
source
nasopharynx
comments
2006-2011
ENA accession
ERR045042 www.ebi.ac.uk
rMLST database accession
121662
sender
Angela Brueggemann, University of Oxford, UK
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
22 updates show details
date entered
2016-07-13
datestamp
2020-03-26

Publications (3)

  • Gladstone RA, Devine V, Jones J, Cleary D, Jefferies JM, Bentley SD, Faust SN, Clarke SC (2017). Pre-vaccine serotype composition within a lineage signposts its serotype replacement - a carriage study over 7 years following pneumococcal conjugate vaccine use in the UK. Microb Genom 3:e000119
  • Gladstone RA, Jefferies JM, Tocheva AS, Beard KR, Garley D, Chong WW, Bentley SD, Faust SN, Clarke SC (2015). Five winters of pneumococcal serotype replacement in UK carriage following PCV introduction. Vaccine 33:2015-21
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
162
total length
2,168,542 bp
max length
104,231 bp
mean length
13,387 bp
N50 contig number
17
N50 length (L50)
42,521
N90 contig number
53
N90 length (L90)
12,193
N95 contig number
68
N95 length (L95)
4,885
loci tagged
1,408
detailed breakdown
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