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Full information on isolate NCTC7465 (id:1685)

Provenance/meta data

id
1685
isolate
NCTC7465
alias
CACF00000000
country
USA
continent
North America
year
1948
serotype
1
host
human
comments
Reference strain of PMEN global clone Greece "Clon
sender
Angela Brueggemann, University of Oxford, UK
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
25 updates show details
date entered
2003-11-09
datestamp
2020-04-02

Publications (7)

  • Bogaardt C, van Tonder AJ, Brueggemann AB (2015). Genomic analyses of pneumococci reveal a wide diversity of bacteriocins - including pneumocyclicin, a novel circular bacteriocin. BMC Genomics 16:554
  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Crisafulli G, Guidotti S, Muzzi A, Torricelli G, Moschioni M, Masignani V, Censini S, Donati C (2013). An extended multi-locus molecular typing schema for Streptococcus pneumoniae demonstrates that a limited number of capsular switch events is responsible for serotype heterogeneity of closely related strains from different countries. Infect Genet Evol 13:151-61
  • Donati C, Hiller NL, Tettelin H, Muzzi A, Croucher NJ, Angiuoli SV, Oggioni M, Dunning Hotopp JC, Hu FZ, Riley DR, Covacci A, Mitchell TJ, Bentley SD, Kilian M, Ehrlich GD, Rappuoli R, Moxon ER, Masignani V (2010). Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species. Genome Biol 11:R107
  • Hiller NL, Eutsey RA, Powell E, Earl JP, Janto B, Martin DP, Dawid S, Ahmed A, Longwell MJ, Dahlgren ME, Ezzo S, Tettelin H, Daugherty SC, Mitchell TJ, Hillman TA, Buchinsky FJ, Tomasz A, de Lencastre H, Sá-Leão R, Post JC, Hu FZ, Ehrlich GD (2011). Differences in genotype and virulence among four multidrug-resistant Streptococcus pneumoniae isolates belonging to the PMEN1 clone. PLoS One 6:e28850
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012
  • Sanguinetti L, Toti S, Reguzzi V, Bagnoli F, Donati C (2012). A novel computational method identifies intra- and inter-species recombination events in Staphylococcus aureus and Streptococcus pneumoniae. PLoS Comput Biol 8:e1002668

Sequence bin

contigs
26
total length
2,084,938 bp
max length
886,553 bp
mean length
80,190 bp
N50 contig number
2
N50 length (L50)
410,559
N90 contig number
10
N90 length (L90)
38,288
N95 contig number
13
N95 length (L95)
19,597
loci tagged
1,394
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Sp_cgc_1000cgMLSTSingle-linkage1000experimentalgroup: 3 (14 isolates)
Sp_cgc_500cgMLSTSingle-linkage500experimentalgroup: 3 (5 isolates)
Sp_cgc_400cgMLSTSingle-linkage400experimentalgroup: 3 (5 isolates)
Sp_cgc_300cgMLSTSingle-linkage300experimentalgroup: 3 (5 isolates)
Sp_cgc_200cgMLSTSingle-linkage200experimentalgroup: 3 (4 isolates)
Sp_cgc_100cgMLSTSingle-linkage100experimentalgroup: 3 (4 isolates)
Sp_cgc_50cgMLSTSingle-linkage50experimentalgroup: 3 (4 isolates)
Sp_cgc_25cgMLSTSingle-linkage25experimentalgroup: 3 (3 isolates)
Sp_cgc_10cgMLSTSingle-linkage10experimentalgroup: 3 (3 isolates)
Sp_cgc_5cgMLSTSingle-linkage5experimentalgroup: 3 (3 isolates)

Schemes and loci

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