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Full information on isolate SI M1 (id:1563)

Provenance/meta data

id
1563
isolate
SI M1
country
Singapore
continent
Asia
year
2000
serotype
23F
host
human
penicillin
4
erythromycin
1
cefotaxime
8
ENA accession
ERR016694 www.ebi.ac.uk
rMLST database accession
31129
sender
Kwan Soo Ko, Asian-Pacific Research Foundation for Infectious Diseases
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
19 updates show details
date entered
2003-08-14
datestamp
2020-03-12

Publications (5)

  • Bogaardt C, van Tonder AJ, Brueggemann AB (2015). Genomic analyses of pneumococci reveal a wide diversity of bacteriocins - including pneumocyclicin, a novel circular bacteriocin. BMC Genomics 16:554
  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Croucher NJ, Harris SR, Fraser C, Quail MA, Burton J, van der Linden M, McGee L, von Gottberg A, Song JH, Ko KS, Pichon B, Baker S, Parry CM, Lambertsen LM, Shahinas D, Pillai DR, Mitchell TJ, Dougan G, Tomasz A, Klugman KP, Parkhill J, Hanage WP, Bentley SD (2011). Rapid pneumococcal evolution in response to clinical interventions. Science 331:430-4
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012
  • Sá-Leão R, Vilhelmsson SE, de Lencastre H, Kristinsson KG, Tomasz A (2002). Diversity of penicillin-nonsusceptible Streptococcus pneumoniae circulating in Iceland after the introduction of penicillin-resistant clone Spain(6B)-2. J Infect Dis 186:966-75

Sequence bin

contigs
146
total length
2,101,485 bp
max length
125,101 bp
mean length
14,394 bp
N50 contig number
18
N50 length (L50)
34,631
N90 contig number
62
N90 length (L90)
9,756
N95 contig number
76
N95 length (L95)
5,774
loci tagged
1,394
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Sp_cgc_1000cgMLSTSingle-linkage1000experimentalgroup: 7 (4508 isolates)
Sp_cgc_500cgMLSTSingle-linkage500experimentalgroup: 2 (87 isolates)
Sp_cgc_400cgMLSTSingle-linkage400experimentalgroup: 2 (87 isolates)
Sp_cgc_300cgMLSTSingle-linkage300experimentalgroup: 2 (86 isolates)
Sp_cgc_200cgMLSTSingle-linkage200experimentalgroup: 2 (85 isolates)
Sp_cgc_100cgMLSTSingle-linkage100experimentalgroup: 2 (78 isolates)
Sp_cgc_50cgMLSTSingle-linkage50experimentalgroup: 2 (65 isolates)
Sp_cgc_25cgMLSTSingle-linkage25experimentalgroup: 11 (7 isolates)

Schemes and loci

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