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Full information on isolate HK P1 (id:1552)

Provenance/meta data

id
1552
isolate
HK P1
country
China
continent
Asia
region
Hong Kong
year
2000
serotype
23F
host
human
penicillin
2
erythromycin
16
cefotaxime
2
ENA accession
ERR016692 www.ebi.ac.uk
rMLST database accession
39941
sender
Kwan Soo Ko, Asian-Pacific Research Foundation for Infectious Diseases
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
46 updates show details
date entered
2003-08-14
datestamp
2020-03-20

Publications (5)

  • Bogaardt C, van Tonder AJ, Brueggemann AB (2015). Genomic analyses of pneumococci reveal a wide diversity of bacteriocins - including pneumocyclicin, a novel circular bacteriocin. BMC Genomics 16:554
  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Croucher NJ, Harris SR, Fraser C, Quail MA, Burton J, van der Linden M, McGee L, von Gottberg A, Song JH, Ko KS, Pichon B, Baker S, Parry CM, Lambertsen LM, Shahinas D, Pillai DR, Mitchell TJ, Dougan G, Tomasz A, Klugman KP, Parkhill J, Hanage WP, Bentley SD (2011). Rapid pneumococcal evolution in response to clinical interventions. Science 331:430-4
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012
  • Sá-Leão R, Vilhelmsson SE, de Lencastre H, Kristinsson KG, Tomasz A (2002). Diversity of penicillin-nonsusceptible Streptococcus pneumoniae circulating in Iceland after the introduction of penicillin-resistant clone Spain(6B)-2. J Infect Dis 186:966-75

Sequence bin

contigs
250
total length
2,069,712 bp
max length
64,604 bp
mean length
8,279 bp
N50 contig number
37
N50 length (L50)
17,379
N90 contig number
121
N90 length (L90)
4,893
N95 contig number
149
N95 length (L95)
2,853
loci tagged
1,384
detailed breakdown
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