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Full information on isolate 5/4 (id:15493)

Provenance/meta data

id
15493
isolate
5/4
country
Singapore
continent
Asia
year
1987
serotype
5
host
human
penicillin
0.023
cefotaxime
0.016
comments
Unknown
sender
Kelly Wyres, Department of Zoology, University of Oxford
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
16 updates show details
date entered
2012-06-01
datestamp
2020-03-18

Publications (2)

  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
38
total length
2,183,089 bp
max length
305,396 bp
mean length
57,450 bp
N50 contig number
5
N50 length (L50)
198,717
N90 contig number
16
N90 length (L90)
43,795
N95 contig number
19
N95 length (L95)
34,457
loci tagged
1,386
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Sp_cgc_1000cgMLSTSingle-linkage1000experimentalgroup: 7 (4508 isolates)
Sp_cgc_500cgMLSTSingle-linkage500experimentalgroup: 63 (11 isolates)
Sp_cgc_400cgMLSTSingle-linkage400experimentalgroup: 63 (11 isolates)
Sp_cgc_300cgMLSTSingle-linkage300experimentalgroup: 64 (8 isolates)
Sp_cgc_200cgMLSTSingle-linkage200experimentalgroup: 494 (8 isolates)

Schemes and loci

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Tools

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