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Full information on isolate 33F/2 (id:15462)

Provenance/primary metadata

id
15462
isolate
33F/2
alias
3084/37
country
Denmark
continent
Europe
year
1937
serotype
33F
host
human
penicillin
0.012
cefotaxime
0.008
comments
Unknown
sender
Kelly Wyres, Department of Zoology, University of Oxford
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
16 updates show details
date entered
2012-06-01
datestamp
2020-05-13

Publications (2)

  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
28
total length
2,045,606 bp
max length
627,050 bp
mean length
73,058 bp
N50 contig number
3
N50 length (L50)
290,639
N90 contig number
9
N90 length (L90)
61,721
N95 contig number
11
N95 length (L95)
51,469
loci tagged
1,395
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Sp_cgc_1000cgMLSTSingle-linkage1000experimentalgroup: 4 (827 isolates)
Sp_cgc_500cgMLSTSingle-linkage500experimentalgroup: 4 (309 isolates)
Sp_cgc_400cgMLSTSingle-linkage400experimentalgroup: 35 (55 isolates)

Schemes and loci

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Tools

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