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Full information on isolate 39/2 (id:15459)

Provenance/primary metadata

id
15459
isolate
39/2
alias
203/40
country
Denmark
continent
Europe
year
1940
serotype
39
host
human
penicillin
0.012
cefotaxime
0.016
comments
Unknown
sender
Kelly Wyres, Department of Zoology, University of Oxford
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
10 updates show details
date entered
2012-06-01
datestamp
2020-04-29

Publications (2)

  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
35
total length
2,087,344 bp
max length
339,967 bp
mean length
59,639 bp
N50 contig number
5
N50 length (L50)
165,977
N90 contig number
15
N90 length (L90)
44,503
N95 contig number
17
N95 length (L95)
37,984
loci tagged
1,403
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Sp_cgc_1000cgMLSTSingle-linkage1000experimentalgroup: 4 (827 isolates)

Schemes and loci

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