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Full information on isolate 6A/2 (id:15458)

Provenance/primary metadata

id
15458
isolate
6A/2
alias
34351
country
USA
continent
North America
year
1952
serotype
6A
host
human
penicillin
0.016
cefotaxime
0.012
comments
Unknown
sender
Kelly Wyres, Department of Zoology, University of Oxford
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
16 updates show details
date entered
2012-06-01
datestamp
2020-04-21

Publications (2)

  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
40
total length
2,199,335 bp
max length
291,368 bp
mean length
54,984 bp
N50 contig number
6
N50 length (L50)
154,805
N90 contig number
15
N90 length (L90)
60,167
N95 contig number
18
N95 length (L95)
37,529
loci tagged
1,397
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Sp_cgc_1000cgMLSTSingle-linkage1000experimentalgroup: 4 (827 isolates)
Sp_cgc_500cgMLSTSingle-linkage500experimentalgroup: 31 (114 isolates)
Sp_cgc_400cgMLSTSingle-linkage400experimentalgroup: 31 (114 isolates)
Sp_cgc_300cgMLSTSingle-linkage300experimentalgroup: 32 (114 isolates)

Schemes and loci

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Tools

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