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Full information on isolate 18F/1 (id:15451)

Provenance/primary metadata

id
15451
isolate
18F/1
country
USA
continent
North America
year
1961
serotype
18F
host
human
penicillin
0.023
cefotaxime
0.012
comments
Unknown
sender
Kelly Wyres, Department of Zoology, University of Oxford
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
15 updates show details
date entered
2012-06-01
datestamp
2020-04-17

Publications (4)

  • Bogaardt C, van Tonder AJ, Brueggemann AB (2015). Genomic analyses of pneumococci reveal a wide diversity of bacteriocins - including pneumocyclicin, a novel circular bacteriocin. BMC Genomics 16:554
  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012
  • Wyres KL, Lambertsen LM, Croucher NJ, McGee L, von Gottberg A, LiƱares J, Jacobs MR, Kristinsson KG, Beall BW, Klugman KP, Parkhill J, Hakenbeck R, Bentley SD, Brueggemann AB (2012). The multidrug-resistant PMEN1 pneumococcus is a paradigm for genetic success. Genome Biol 13:R103

Sequence bin

contigs
20
total length
2,047,749 bp
max length
440,252 bp
mean length
102,388 bp
N50 contig number
3
N50 length (L50)
330,156
N90 contig number
9
N90 length (L90)
63,815
N95 contig number
11
N95 length (L95)
56,712
loci tagged
1,400
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Sp_cgc_1000cgMLSTSingle-linkage1000experimentalgroup: 4 (827 isolates)

Schemes and loci

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