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Full information on isolate 22A/3 (id:15448)

Provenance/primary metadata

id
15448
isolate
22A/3
country
Denmark
continent
Europe
year
1939
serotype
22A
host
human
penicillin
0.023
cefotaxime
0.016
comments
Unknown
sender
Kelly Wyres, Department of Zoology, University of Oxford
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
22 updates show details
date entered
2012-06-01
datestamp
2020-05-12

Publications (2)

  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
29
total length
2,055,285 bp
max length
360,138 bp
mean length
70,872 bp
N50 contig number
5
N50 length (L50)
143,010
N90 contig number
12
N90 length (L90)
59,519
N95 contig number
14
N95 length (L95)
28,101
loci tagged
1,397
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Sp_cgc_1000cgMLSTSingle-linkage1000experimentalgroup: 4 (827 isolates)
Sp_cgc_500cgMLSTSingle-linkage500experimentalgroup: 24 (75 isolates)
Sp_cgc_400cgMLSTSingle-linkage400experimentalgroup: 24 (2 isolates)
Sp_cgc_300cgMLSTSingle-linkage300experimentalgroup: 24 (2 isolates)
Sp_cgc_200cgMLSTSingle-linkage200experimentalgroup: 25 (2 isolates)
Sp_cgc_100cgMLSTSingle-linkage100experimentalgroup: 26 (2 isolates)
Sp_cgc_50cgMLSTSingle-linkage50experimentalgroup: 26 (2 isolates)
Sp_cgc_25cgMLSTSingle-linkage25experimentalgroup: 27 (2 isolates)
Sp_cgc_10cgMLSTSingle-linkage10experimentalgroup: 28 (2 isolates)
Sp_cgc_5cgMLSTSingle-linkage5experimentalgroup: 28 (2 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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