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Full information on isolate 15C/2 (id:15442)

Provenance/meta data

id
15442
isolate
15C/2
alias
553/62
country
Denmark
continent
Europe
year
1962
serotype
15C
host
human
penicillin
0.023
cefotaxime
0.012
comments
Unknown
sender
Kelly Wyres, Department of Zoology, University of Oxford
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
11 updates show details
date entered
2012-06-01
datestamp
2020-03-20

Publications (2)

  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
59
total length
2,087,687 bp
max length
245,252 bp
mean length
35,385 bp
N50 contig number
8
N50 length (L50)
75,350
N90 contig number
26
N90 length (L90)
22,961
N95 contig number
31
N95 length (L95)
19,063
loci tagged
1,395
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Sp_cgc_1000cgMLSTSingle-linkage1000experimentalgroup: 71 (28 isolates)
Sp_cgc_500cgMLSTSingle-linkage500experimentalgroup: 18 (4 isolates)
Sp_cgc_400cgMLSTSingle-linkage400experimentalgroup: 339 (4 isolates)

Schemes and loci

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Tools

Analysis: