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Full information on isolate 7C/3 (id:15441)

Provenance/meta data

id
15441
isolate
7C/3
country
USA
continent
North America
year
1971
serotype
7C
host
human
penicillin
0.016
cefotaxime
0.016
comments
Unknown
sender
Kelly Wyres, Department of Zoology, University of Oxford
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
11 updates show details
date entered
2012-06-01
datestamp
2020-04-03

Publications (2)

  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
56
total length
2,190,564 bp
max length
347,477 bp
mean length
39,118 bp
N50 contig number
5
N50 length (L50)
134,023
N90 contig number
19
N90 length (L90)
28,961
N95 contig number
23
N95 length (L95)
21,526
loci tagged
1,389
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Sp_cgc_1000cgMLSTSingle-linkage1000experimentalgroup: 7 (4508 isolates)

Schemes and loci

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