PubMLST Database home Contents
Log in
Help

Full information on isolate 23F/2 (id:15440)

Provenance/meta data

id
15440
isolate
23F/2
country
Denmark
continent
Europe
year
1940
serotype
23F
host
human
penicillin
0.016
cefotaxime
0.012
comments
Unknown
sender
Kelly Wyres, Department of Zoology, University of Oxford
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
14 updates show details
date entered
2012-06-01
datestamp
2020-03-18

Publications (2)

  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
36
total length
2,154,979 bp
max length
404,609 bp
mean length
59,861 bp
N50 contig number
4
N50 length (L50)
191,264
N90 contig number
13
N90 length (L90)
50,567
N95 contig number
16
N95 length (L95)
20,231
loci tagged
1,396
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Sp_cgc_1000cgMLSTSingle-linkage1000experimentalgroup: 12 (2 isolates)
Sp_cgc_500cgMLSTSingle-linkage500experimentalgroup: 16 (2 isolates)
Sp_cgc_400cgMLSTSingle-linkage400experimentalgroup: 16 (2 isolates)
Sp_cgc_300cgMLSTSingle-linkage300experimentalgroup: 16 (2 isolates)
Sp_cgc_200cgMLSTSingle-linkage200experimentalgroup: 17 (2 isolates)
Sp_cgc_100cgMLSTSingle-linkage100experimentalgroup: 18 (2 isolates)
Sp_cgc_50cgMLSTSingle-linkage50experimentalgroup: 18 (2 isolates)
Sp_cgc_25cgMLSTSingle-linkage25experimentalgroup: 19 (2 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Analysis: