PubMLST Database home Contents
Log in
Help

Full information on isolate 16F/2 (id:15437)

Provenance/meta data

id
15437
isolate
16F/2
alias
nr.34361
country
USA
continent
North America
year
1952
serotype
16F
host
human
penicillin
0.016
cefotaxime
0.006
comments
Unknown
sender
Kelly Wyres, Department of Zoology, University of Oxford
curator
Auto Tagger
update history
10 updates show details
date entered
2012-06-01
datestamp
2020-02-14

Publications (2)

  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
32
total length
2,134,100 bp
max length
269,769 bp
mean length
66,691 bp
N50 contig number
5
N50 length (L50)
136,301
N90 contig number
14
N90 length (L90)
56,108
N95 contig number
17
N95 length (L95)
29,655
loci tagged
1,397
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Sp_cgc_1000cgMLSTSingle-linkage1000experimentalgroup: 11 (72 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Analysis: