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Full information on isolate 15A/2 (id:15436)

Provenance/meta data

id
15436
isolate
15A/2
alias
389/39
country
Denmark
continent
Europe
year
1939
serotype
15A
host
human
penicillin
0.016
cefotaxime
0.012
comments
Unknown
sender
Kelly Wyres, Department of Zoology, University of Oxford
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
10 updates show details
date entered
2012-06-01
datestamp
2020-03-09

Publications (2)

  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
47
total length
2,064,294 bp
max length
196,390 bp
mean length
43,922 bp
N50 contig number
7
N50 length (L50)
118,679
N90 contig number
19
N90 length (L90)
42,615
N95 contig number
23
N95 length (L95)
21,983
loci tagged
1,400
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Sp_cgc_1000cgMLSTSingle-linkage1000experimentalgroup: 7 (4508 isolates)
Sp_cgc_500cgMLSTSingle-linkage500experimentalgroup: 13 (22 isolates)

Schemes and loci

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Tools

Analysis: