PubMLST Database home Contents
Log in
Help

Full information on isolate 11B/2 (id:15435)

Provenance/meta data

id
15435
isolate
11B/2
alias
8087/40
country
Denmark
continent
Europe
year
1940
serotype
11B
host
human
penicillin
0.023
cefotaxime
0.023
comments
Unknown
sender
Kelly Wyres, Department of Zoology, University of Oxford
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
7 updates show details
date entered
2012-06-01
datestamp
2020-03-05

Publications (2)

  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
39
total length
2,024,686 bp
max length
312,743 bp
mean length
51,916 bp
N50 contig number
5
N50 length (L50)
124,796
N90 contig number
16
N90 length (L90)
57,052
N95 contig number
19
N95 length (L95)
29,446
loci tagged
1,403
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Sp_cgc_1000cgMLSTSingle-linkage1000experimentalgroup: 7 (4508 isolates)
Sp_cgc_500cgMLSTSingle-linkage500experimentalgroup: 12 (2 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Analysis: