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Full information on isolate 35F/2 (id:15434)

Provenance/meta data

id
15434
isolate
35F/2
alias
361/39
country
Denmark
continent
Europe
year
1939
serotype
35F
host
human
penicillin
0.016
cefotaxime
0.008
comments
Unknown
sender
Kelly Wyres, Department of Zoology, University of Oxford
curator
Melissa Jansen van Rensburg, University of Oxford, UK (E-mail: Melissa.JansenvanRensburg@ndph.ox.ac.uk)
update history
10 updates show details
date entered
2012-06-01
datestamp
2020-03-12

Publications (2)

  • Brueggemann AB, Harrold CL, Rezaei Javan R, van Tonder AJ, McDonnell AJ, Edwards BA (2017). Pneumococcal prophages are diverse, but not without structure or history. Sci Rep 7:42976
  • Rezaei Javan R, van Tonder AJ, King JP, Harrold CL, Brueggemann AB (2018). Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. Front Microbiol 9:2012

Sequence bin

contigs
30
total length
2,095,728 bp
max length
438,475 bp
mean length
69,858 bp
N50 contig number
3
N50 length (L50)
301,365
N90 contig number
13
N90 length (L90)
41,038
N95 contig number
15
N95 length (L95)
38,124
loci tagged
1,405
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Sp_cgc_1000cgMLSTSingle-linkage1000experimentalgroup: 8 (2 isolates)
Sp_cgc_500cgMLSTSingle-linkage500experimentalgroup: 11 (2 isolates)
Sp_cgc_400cgMLSTSingle-linkage400experimentalgroup: 11 (2 isolates)
Sp_cgc_300cgMLSTSingle-linkage300experimentalgroup: 11 (2 isolates)
Sp_cgc_200cgMLSTSingle-linkage200experimentalgroup: 12 (2 isolates)
Sp_cgc_100cgMLSTSingle-linkage100experimentalgroup: 13 (2 isolates)
Sp_cgc_50cgMLSTSingle-linkage50experimentalgroup: 13 (2 isolates)
Sp_cgc_25cgMLSTSingle-linkage25experimentalgroup: 14 (2 isolates)
Sp_cgc_10cgMLSTSingle-linkage10experimentalgroup: 15 (2 isolates)
Sp_cgc_5cgMLSTSingle-linkage5experimentalgroup: 15 (2 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Analysis: