Full information on isolate ERR403712 (id:8079)

Provenance/primary metadata

id
8079
isolate
ERR403712
subspecies
enterica
serovar
Paratyphi BIII
ENA accession
ERR403712 www.ebi.ac.uk
rMLST database accession
102615
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
14 updates show details
date entered
2015-05-14
datestamp
2016-09-21

Sequence bin

contigs
99
total length
4,727,683 bp
max length
398,713 bp
mean length
47,755 bp
N50 contig number
12
N50 length (L50)
143,341
N90 contig number
33
N90 length (L90)
48,820
N95 contig number
38
N95 length (L95)
31,610
loci tagged
6,580

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 195 (25 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 258 (24 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 350 (22 isolates)

Schemes and loci

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Tools

Analysis: