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Full information on isolate AKU_12601 (id:8)

Provenance/meta data

id
8
isolate
AKU_12601
aliases
FM200053; NC_011147; PRJEA30943; PRJNA59269
subspecies
enterica
serovar
Paratyphi A
country
Pakistan
continent
Asia
year
2004
source
clinical
detailed source
child with paratyphoid fever
ENA accession
FM200053 www.ebi.ac.uk
rMLST database accession
77
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
15 updates show details
date entered
2014-11-11
datestamp
2018-12-05

Publication (1)

  • Holt KE, Thomson NR, Wain J, Langridge GC, Hasan R, Bhutta ZA, Quail MA, Norbertczak H, Walker D, Simmonds M, White B, Bason N, Mungall K, Dougan G, Parkhill J (2009). Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi. BMC Genomics 10:36

Sequence bin

contigs
1
length
4581797 bp
loci tagged
6,416
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 7 (329 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 8 (288 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 8 (64 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 254 (56 isolates)

Schemes and loci

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