Full information on isolate ERR460146 (id:7215)

Provenance/primary metadata

id
7215
isolate
ERR460146
subspecies
enterica
serovar
Paratyphi BIII
ENA accession
ERR460146 www.ebi.ac.uk
rMLST database accession
98353
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
8 updates show details
date entered
2015-05-14
datestamp
2016-09-21

Sequence bin

contigs
133
total length
4,881,928 bp
max length
342,965 bp
mean length
36,707 bp
N50 contig number
13
N50 length (L50)
110,024
N90 contig number
42
N90 length (L90)
36,604
N95 contig number
50
N95 length (L95)
25,703
loci tagged
6,587

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 195 (25 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 258 (24 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 350 (22 isolates)

Schemes and loci

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Tools

Analysis: