Full information on isolate ERR460144 (id:7214)

Provenance/primary metadata

id
7214
isolate
ERR460144
subspecies
enterica
serovar
Paratyphi BIII
ENA accession
ERR460144 www.ebi.ac.uk
rMLST database accession
98352
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
11 updates show details
date entered
2015-05-14
datestamp
2016-09-21

Sequence bin

contigs
139
total length
4,796,633 bp
max length
342,974 bp
mean length
34,509 bp
N50 contig number
12
N50 length (L50)
145,518
N90 contig number
40
N90 length (L90)
34,599
N95 contig number
48
N95 length (L95)
26,298
loci tagged
6,573

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 195 (25 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 258 (24 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 350 (22 isolates)

Schemes and loci

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Tools

Analysis: