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Full information on isolate ERR278741 (id:3209)

Provenance/primary metadata

id
3209
isolate
ERR278741
alias
ERR278741
subspecies
enterica
serovar
Paratyphi BIII
rMLST database accession
41628
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
10 updates show details
date entered
2014-11-21
datestamp
2016-09-20

Sequence bin

contigs
92
total length
4,706,224 bp
max length
420,157 bp
mean length
51,155 bp
N50 contig number
8
N50 length (L50)
222,493
N90 contig number
28
N90 length (L90)
45,849
N95 contig number
34
N95 length (L95)
34,224
loci tagged
6,579
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 363 (3 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 493 (2 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 684 (2 isolates)

Schemes and loci

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Tools

Analysis: