Full information on isolate ERR278720 (id:3207)

Provenance/primary metadata

id
3207
isolate
ERR278720
alias
ERR278720
subspecies
enterica
serovar
Paratyphi BIII
rMLST database accession
41626
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
11 updates show details
date entered
2014-11-21
datestamp
2018-12-05

Sequence bin

contigs
80
total length
4,878,284 bp
max length
420,097 bp
mean length
60,979 bp
N50 contig number
8
N50 length (L50)
230,546
N90 contig number
25
N90 length (L90)
50,563
N95 contig number
30
N95 length (L95)
42,826
loci tagged
6,580

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 1 (5 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 1 (5 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 332 (4 isolates)

Schemes and loci

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