Full information on isolate ERR278720 (id:3207)
Provenance/primary metadata
- id
- 3207
- isolate
- ERR278720
- alias
- ERR278720
- subspecies
- enterica
- serovar
- Paratyphi BIII
- rMLST database accession
- 41626
- sender
- Maddi Pearce, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 11 updates show details
- date entered
- 2014-11-21
- datestamp
- 2018-12-05
Sequence bin
- contigs
- 80
- total length
- 4,878,284 bp
- max length
- 420,097 bp
- mean length
- 60,979 bp
- N50 contig number
- 8
- N50 length (L50)
- 230,546
- N90 contig number
- 25
- N90 length (L90)
- 50,563
- N95 contig number
- 30
- N95 length (L95)
- 42,826
- loci tagged
- 6,580
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Salm_cgc_200 | SalmcgMLST v1.0 | Single-linkage | 200 | experimental | group: 1 (54 isolates) |
| Salm_cgc_100 | SalmcgMLST v1.0 | Single-linkage | 100 | experimental | group: 1 (5 isolates) |
| Salm_cgc_50 | SalmcgMLST v1.0 | Single-linkage | 50 | experimental | group: 1 (5 isolates) |
| Salm_cgc_25 | SalmcgMLST v1.0 | Single-linkage | 25 | experimental | group: 332 (4 isolates) |
Schemes and loci
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