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Full information on isolate CT18 (id:2)

Provenance/meta data

id
2
isolate
CT18
aliases
AL513382; NC_003198; PRJNA236; PRJNA57793
subspecies
enterica
serovar
Typhi
ENA accession
AL513382 www.ebi.ac.uk
rMLST database accession
71
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
14 updates show details
date entered
2014-11-11
datestamp
2018-12-05

Publication (1)

  • Parkhill J, Dougan G, James KD, Thomson NR, Pickard D, Wain J, Churcher C, Mungall KL, Bentley SD, Holden MT, Sebaihia M, Baker S, Basham D, Brooks K, Chillingworth T, Connerton P, Cronin A, Davis P, Davies RM, Dowd L, White N, Farrar J, Feltwell T, Hamlin N, Haque A, Hien TT, Holroyd S, Jagels K, Krogh A, Larsen TS, Leather S, Moule S, O'Gaora P, Parry C, Quail M, Rutherford K, Simmonds M, Skelton J, Stevens K, Whitehead S, Barrell BG (2001). Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nature 413:848-52

Sequence bin

contigs
1
length
4809037 bp
loci tagged
6,376
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 2 (3000 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 4 (2586 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 198 (180 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 2 (2 isolates)

Schemes and loci

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