Full information on isolate SAL_MA0292AA_AS (id:17754)

Provenance/primary metadata

id
17754
isolate
SAL_MA0292AA_AS
aliases
SAL_FA9380AA; SRR3223738
subspecies
enterica
serovar
Enteritidis
country
Indonesia
continent
Asia
detailed source
Asia
comments
Enterobase Isolate
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
2 updates show details
date entered
2018-11-08
datestamp
2018-11-10

Sequence bin

contigs
49
total length
4,686,974 bp
max length
563,009 bp
mean length
95,653 bp
N50 contig number
7
N50 length (L50)
219,582
N90 contig number
21
N90 length (L90)
59,715
N95 contig number
26
N95 length (L95)
46,220
loci tagged
6,537

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 185 (9 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 1596 (2 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: