Full information on isolate 32387 (id:17233)

Provenance/primary metadata

id
17233
isolate
32387
aliases
SAL_BA9990AA; SRR1968988
subspecies
enterica
serovar
Java
detailed source
I
comments
Enterobase Isolate
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
2 updates show details
date entered
2018-09-26
datestamp
2018-09-27

Sequence bin

contigs
55
total length
4,672,392 bp
max length
497,362 bp
mean length
84,953 bp
N50 contig number
7
N50 length (L50)
258,015
N90 contig number
21
N90 length (L90)
56,836
N95 contig number
25
N95 length (L95)
45,909
loci tagged
6,570

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 185 (9 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 241 (7 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 325 (7 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Analysis: