Full information on isolate 352775 (id:16270)

Provenance/primary metadata

id
16270
isolate
352775
aliases
SAL_JA5702AA; SRR5584938
subspecies
enterica
serovar
Java
detailed source
I
comments
Enterobase Isolate
sender
Maddi Pearce
curator
Maddi Pearce, University of Oxford, UK (E-mail: madison.pearce@hertford.ox.ac.uk)
update history
3 updates show details
date entered
2018-04-16
datestamp
2018-09-27

Sequence bin

contigs
62
total length
4,693,301 bp
max length
628,876 bp
mean length
75,699 bp
N50 contig number
6
N50 length (L50)
321,246
N90 contig number
21
N90 length (L90)
56,834
N95 contig number
25
N95 length (L95)
44,757
loci tagged
6,594

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 195 (25 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 258 (24 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 350 (22 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Analysis: