Full information on isolate SRR1646145_Enterobase (id:14414)

Provenance/primary metadata

id
14414
isolate
SRR1646145_Enterobase
alias
H122920486
subspecies
enterica
serovar
Java
comments
Enterobase entry.
ENA accession
SRR1646145 www.ebi.ac.uk
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
5 updates show details
date entered
2016-07-15
datestamp
2016-09-22

Sequence bin

contigs
62
total length
4,720,272 bp
max length
631,431 bp
mean length
76,134 bp
N50 contig number
6
N50 length (L50)
347,324
N90 contig number
20
N90 length (L90)
59,053
N95 contig number
25
N95 length (L95)
46,118
loci tagged
6,598

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 185 (9 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 241 (7 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 325 (7 isolates)

Schemes and loci

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Tools

Analysis: