Full information on isolate SRR1645812_Enterobase (id:14408)

Provenance/primary metadata

id
14408
isolate
SRR1645812_Enterobase
alias
H122740603
subspecies
enterica
serovar
Java
comments
Enterobase entry.
ENA accession
SRR1645812 www.ebi.ac.uk
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
5 updates show details
date entered
2016-07-15
datestamp
2016-09-22

Sequence bin

contigs
65
total length
4,746,336 bp
max length
626,125 bp
mean length
73,021 bp
N50 contig number
6
N50 length (L50)
251,238
N90 contig number
21
N90 length (L90)
73,908
N95 contig number
26
N95 length (L95)
32,996
loci tagged
6,599

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 195 (25 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 258 (24 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 350 (22 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Analysis: