Full information on isolate ERR278734_Enterobase (id:14397)

Provenance/primary metadata

id
14397
isolate
ERR278734_Enterobase
alias
H122380540-sc-2013-01-21T15-41-58Z-1551855
subspecies
enterica
serovar
Java
comments
Enterobase entry.
ENA accession
ERR278734 www.ebi.ac.uk
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
5 updates show details
date entered
2016-07-15
datestamp
2016-09-22

Sequence bin

contigs
49
total length
4,752,973 bp
max length
628,570 bp
mean length
97,000 bp
N50 contig number
6
N50 length (L50)
363,687
N90 contig number
15
N90 length (L90)
91,639
N95 contig number
18
N95 length (L95)
58,056
loci tagged
6,598

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 195 (25 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 258 (24 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 350 (22 isolates)

Schemes and loci

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Tools

Analysis: