Full information on isolate ERR129865 (id:1409)

Provenance/primary metadata

id
1409
isolate
ERR129865
alias
ERR129865
subspecies
enterica
serovar
Paratyphi BIII
ENA accession
ERR212515 www.ebi.ac.uk
rMLST database accession
35345
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
11 updates show details
date entered
2014-11-21
datestamp
2016-09-20

Sequence bin

contigs
109
total length
4,844,950 bp
max length
418,806 bp
mean length
44,450 bp
N50 contig number
11
N50 length (L50)
168,434
N90 contig number
35
N90 length (L90)
39,605
N95 contig number
42
N95 length (L95)
30,382
loci tagged
6,574

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 195 (25 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 258 (24 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 350 (22 isolates)

Schemes and loci

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Tools

Analysis: