PubMLST Database home Contents
Log in
Help

Full information on isolate ERR226485 (id:1408)

Provenance/primary metadata

id
1408
isolate
ERR226485
alias
ERR226485
subspecies
enterica
serovar
Paratyphi BIII
ENA accession
ERR212608
rMLST database accession
35344
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
11 updates show details
date entered
2014-11-21
datestamp
2016-09-20

Sequence bin

contigs
97
total length
4,844,867 bp
max length
436,140 bp
mean length
49,948 bp
N50 contig number
9
N50 length (L50)
201,642
N90 contig number
28
N90 length (L90)
52,324
N95 contig number
33
N95 length (L95)
34,157
loci tagged
6,583
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 195 (25 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 258 (24 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 350 (22 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Analysis: