Full information on isolate SRR3199544_Enterobase (id:13803)

Provenance/primary metadata

id
13803
isolate
SRR3199544_Enterobase
alias
FDA00009944
subspecies
unknown
serovar
unknown
comments
Enterobase entry.
ENA accession
SRR3199544 www.ebi.ac.uk
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
3 updates show details
date entered
2016-07-15
datestamp
2016-09-22

Sequence bin

contigs
68
total length
4,677,908 bp
max length
629,008 bp
mean length
68,793 bp
N50 contig number
7
N50 length (L50)
246,207
N90 contig number
27
N90 length (L90)
46,216
N95 contig number
34
N95 length (L95)
26,488
loci tagged
6,577

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 185 (9 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 241 (7 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 325 (7 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Analysis: