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Full information on isolate ERR278740 (id:1359)

Provenance/primary metadata

id
1359
isolate
ERR278740
alias
ERR278740
subspecies
enterica
serovar
Paratyphi BIII
ENA accession
ERR235201
rMLST database accession
35295
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
11 updates show details
date entered
2014-11-21
datestamp
2016-09-20

Sequence bin

contigs
99
total length
4,845,183 bp
max length
421,127 bp
mean length
48,942 bp
N50 contig number
8
N50 length (L50)
207,464
N90 contig number
25
N90 length (L90)
49,467
N95 contig number
31
N95 length (L95)
36,197
loci tagged
6,585
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 195 (25 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 258 (24 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 350 (22 isolates)

Schemes and loci

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Analysis: