Full information on isolate ERR278738 (id:1358)

Provenance/primary metadata

id
1358
isolate
ERR278738
alias
ERR278738
subspecies
enterica
serovar
Paratyphi BIII
ENA accession
ERR235240 www.ebi.ac.uk
rMLST database accession
35294
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
11 updates show details
date entered
2014-11-21
datestamp
2016-09-20

Sequence bin

contigs
96
total length
4,844,496 bp
max length
504,419 bp
mean length
50,464 bp
N50 contig number
8
N50 length (L50)
201,645
N90 contig number
27
N90 length (L90)
48,820
N95 contig number
32
N95 length (L95)
42,826
loci tagged
6,585

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 195 (25 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 258 (24 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 350 (22 isolates)

Schemes and loci

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