PubMLST Database home Contents
Log in
Help

Full information on isolate ERR278736 (id:1356)

Provenance/primary metadata

id
1356
isolate
ERR278736
alias
ERR278736
subspecies
enterica
serovar
Paratyphi BIII
ENA accession
ERR212560
rMLST database accession
35292
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
11 updates show details
date entered
2014-11-21
datestamp
2016-09-20

Sequence bin

contigs
98
total length
4,841,186 bp
max length
421,141 bp
mean length
49,400 bp
N50 contig number
8
N50 length (L50)
197,225
N90 contig number
27
N90 length (L90)
46,319
N95 contig number
33
N95 length (L95)
31,856
loci tagged
6,575
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 195 (25 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 258 (24 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 350 (22 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Analysis: