Full information on isolate ERR278734 (id:1353)

Provenance/primary metadata

id
1353
isolate
ERR278734
alias
ERR278734
subspecies
enterica
serovar
Paratyphi BIII
ENA accession
ERR235217 www.ebi.ac.uk
rMLST database accession
35289
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
11 updates show details
date entered
2014-11-21
datestamp
2016-09-20

Sequence bin

contigs
71
total length
4,753,275 bp
max length
507,672 bp
mean length
66,948 bp
N50 contig number
9
N50 length (L50)
170,600
N90 contig number
27
N90 length (L90)
50,799
N95 contig number
32
N95 length (L95)
37,906
loci tagged
6,578

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 195 (25 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 258 (24 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 350 (22 isolates)

Schemes and loci

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Tools

Analysis: