Full information on isolate ERR278730 (id:1343)

Provenance/primary metadata

id
1343
isolate
ERR278730
alias
ERR278730
subspecies
enterica
serovar
Paratyphi BIII
ENA accession
ERR230430 www.ebi.ac.uk
rMLST database accession
35273
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
11 updates show details
date entered
2014-11-21
datestamp
2016-09-20

Sequence bin

contigs
71
total length
4,680,619 bp
max length
505,858 bp
mean length
65,925 bp
N50 contig number
8
N50 length (L50)
204,077
N90 contig number
24
N90 length (L90)
56,859
N95 contig number
29
N95 length (L95)
39,996
loci tagged
6,575

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 195 (25 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 258 (24 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 342 (2 isolates)

Schemes and loci

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