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Full information on isolate ERR278722 (id:1336)

Provenance/primary metadata

id
1336
isolate
ERR278722
alias
ERR278722
subspecies
enterica
serovar
Paratyphi BIII
ENA accession
ERR230438
rMLST database accession
35266
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
14 updates show details
date entered
2014-11-21
datestamp
2018-08-05

Sequence bin

contigs
81
total length
4,701,091 bp
max length
418,802 bp
mean length
58,039 bp
N50 contig number
7
N50 length (L50)
239,082
N90 contig number
22
N90 length (L90)
59,217
N95 contig number
27
N95 length (L95)
45,777
loci tagged
6,576
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 183 (5 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 239 (5 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 323 (3 isolates)

Schemes and loci

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