Full information on isolate ERR278721 (id:1335)

Provenance/primary metadata

id
1335
isolate
ERR278721
alias
ERR278721
subspecies
enterica
serovar
Paratyphi BIII
ENA accession
ERR217432 www.ebi.ac.uk
rMLST database accession
35265
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
14 updates show details
date entered
2014-11-21
datestamp
2018-08-05

Sequence bin

contigs
86
total length
4,703,187 bp
max length
418,814 bp
mean length
54,689 bp
N50 contig number
8
N50 length (L50)
239,090
N90 contig number
24
N90 length (L90)
45,969
N95 contig number
29
N95 length (L95)
38,756
loci tagged
6,568

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 183 (5 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 239 (5 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 323 (3 isolates)

Schemes and loci

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Tools

Analysis: