PubMLST Database home Contents
Log in
Help

Full information on isolate ERR278715 (id:1330)

Provenance/primary metadata

id
1330
isolate
ERR278715
alias
ERR278715
subspecies
enterica
serovar
Paratyphi BIII
ENA accession
ERR235277
rMLST database accession
35260
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
12 updates show details
date entered
2014-11-21
datestamp
2018-12-05

Sequence bin

contigs
89
total length
4,877,709 bp
max length
483,236 bp
mean length
54,806 bp
N50 contig number
9
N50 length (L50)
178,378
N90 contig number
30
N90 length (L90)
48,820
N95 contig number
36
N95 length (L95)
36,735
loci tagged
6,580
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 1 (5 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 1 (5 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 332 (4 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Analysis: