Full information on isolate ERR278712 (id:1327)

Provenance/primary metadata

id
1327
isolate
ERR278712
alias
ERR278712
subspecies
enterica
serovar
Paratyphi BIII
ENA accession
ERR235265 www.ebi.ac.uk
rMLST database accession
35257
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
12 updates show details
date entered
2014-11-21
datestamp
2018-12-05

Sequence bin

contigs
90
total length
4,960,736 bp
max length
496,111 bp
mean length
55,120 bp
N50 contig number
10
N50 length (L50)
180,133
N90 contig number
30
N90 length (L90)
48,823
N95 contig number
37
N95 length (L95)
30,518
loci tagged
6,570

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 1 (5 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 1 (5 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 332 (4 isolates)

Schemes and loci

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