PubMLST Database home Contents
Log in
Help

Full information on isolate ERR278708 (id:1323)

Provenance/primary metadata

id
1323
isolate
ERR278708
alias
ERR278708
subspecies
enterica
serovar
Paratyphi BIII
ENA accession
ERR212527
rMLST database accession
35253
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
11 updates show details
date entered
2014-11-21
datestamp
2016-09-20

Sequence bin

contigs
76
total length
4,652,162 bp
max length
411,214 bp
mean length
61,213 bp
N50 contig number
10
N50 length (L50)
178,338
N90 contig number
27
N90 length (L90)
50,591
N95 contig number
33
N95 length (L95)
32,614
loci tagged
6,564
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 140 (2 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 187 (2 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 249 (2 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Analysis: