Full information on isolate ERR278700 (id:1317)

Provenance/primary metadata

id
1317
isolate
ERR278700
alias
ERR278700
subspecies
enterica
serovar
Paratyphi BIII
ENA accession
ERR108666 www.ebi.ac.uk
rMLST database accession
35247
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
12 updates show details
date entered
2014-11-21
datestamp
2016-12-05

Sequence bin

contigs
94
total length
4,683,787 bp
max length
399,679 bp
mean length
49,828 bp
N50 contig number
9
N50 length (L50)
166,586
N90 contig number
30
N90 length (L90)
45,970
N95 contig number
36
N95 length (L95)
33,142
loci tagged
6,556

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 185 (9 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 241 (7 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 325 (7 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Analysis: