Full information on isolate ERR278698 (id:1315)

Provenance/primary metadata

id
1315
isolate
ERR278698
alias
ERR278698
subspecies
enterica
serovar
Paratyphi BIII
ENA accession
ERR237542 www.ebi.ac.uk
rMLST database accession
35245
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
14 updates show details
date entered
2014-11-21
datestamp
2018-10-05

Sequence bin

contigs
74
total length
4,645,836 bp
max length
418,814 bp
mean length
62,782 bp
N50 contig number
8
N50 length (L50)
239,036
N90 contig number
24
N90 length (L90)
50,575
N95 contig number
29
N95 length (L95)
42,652
loci tagged
6,586

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 183 (5 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 239 (5 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 323 (3 isolates)

Schemes and loci

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Tools

Analysis: