Full information on isolate SRR1966218_Enterobase (id:11508)

Provenance/primary metadata

id
11508
isolate
SRR1966218_Enterobase
alias
9171
subspecies
enterica
serovar
unknown
comments
Enterobase entry.
ENA accession
SRR1966218 www.ebi.ac.uk
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
4 updates show details
date entered
2016-07-15
datestamp
2016-09-22

Sequence bin

contigs
58
total length
4,714,414 bp
max length
496,578 bp
mean length
81,283 bp
N50 contig number
7
N50 length (L50)
230,108
N90 contig number
24
N90 length (L90)
45,986
N95 contig number
30
N95 length (L95)
31,592
loci tagged
6,582

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 195 (25 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 258 (24 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 350 (22 isolates)

Schemes and loci

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Tools

Analysis: