Full information on isolate SRR1646159 (id:10410)

Provenance/primary metadata

id
10410
isolate
SRR1646159
alias
H124100717
subspecies
enterica
serovar
Java
year
2012
source
clinical
detailed source
Human
ENA accession
SRR1646159 www.ebi.ac.uk
rMLST database accession
112475
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
7 updates show details
date entered
2015-05-14
datestamp
2016-09-21

Sequence bin

contigs
137
total length
4,839,090 bp
max length
320,597 bp
mean length
35,322 bp
N50 contig number
17
N50 length (L50)
89,222
N90 contig number
52
N90 length (L90)
33,573
N95 contig number
60
N95 length (L95)
25,613
loci tagged
6,562

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 195 (25 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 258 (24 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 350 (22 isolates)

Schemes and loci

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Tools

Analysis: